Agent Skills
› brycewang-stanford/Awesome-Journal-Skills
› cogpsych-open-science-and-transparency
cogpsych-open-science-and-transparency
GitHub协助认知心理学论文满足开放科学要求，准备数据、模型代码及材料存档以获取DOI，完成Elsevier数据声明与利益冲突申报，处理预注册链接及共享限制说明，确保建模结果可复现。
Trigger Scenarios
构建数据、模型代码和材料的存储库
完成Elsevier研究数据声明和利益冲突声明
决定并说明敏感或第三方数据的共享限制
链接预注册报告其状态
审稿人或编辑指出透明度或可复现性问题
Install
npx skills add brycewang-stanford/Awesome-Journal-Skills --skill cogpsych-open-science-and-transparency -g -y
SKILL.md
Frontmatter
{
"name": "cogpsych-open-science-and-transparency",
"description": "Use when meeting Cognitive Psychology (Elsevier) open-science expectations — sharing data, model code, analysis scripts, and materials so the modeling is reproducible, depositing in repositories with persistent identifiers, completing the Elsevier research-data and competing-interest declarations, and preregistering where applicable. Prepares compliance; it does not waive requirements. Verify current wording on the official guide for authors."
}
Open Science & Transparency (cogpsych-open-science-and-transparency)
Because the contribution is a model fit to data, reproducibility here means more than open data: it means the model code and analysis scripts regenerate every reported fit. Authors are strongly encouraged to share data, model code, and materials. This skill prepares the deposits and the Elsevier declarations early, so the modeling is reproducible at submission rather than promised at acceptance. Confirm the current policy wording on the journal's guide for authors (检索于 2026-06；以官网为准).
When to trigger
- Building the data, model-code, and materials deposits
- Completing Elsevier's research-data statement and competing-interest declaration
- Deciding whether (and how) to claim a restriction on sharing sensitive/third-party data
- Linking a preregistration and reporting its status
- A reviewer or editor flagged transparency or reproducibility
What to prepare (verify current wording on the official page)
- Open data. Deposit trial-level data with a codebook/data dictionary in a repository that mints a persistent identifier (DOI) (OSF, Mendeley Data, Dataverse, Zenodo). State availability in the Elsevier research-data statement.
- Model and analysis code (the venue-specific must). Deposit the model-fitting code and analysis scripts with seeds and pinned versions; the reported fits, figures, and tables must regenerate in a fresh session. This is what makes a model-driven paper reproducible.
- Materials. Deposit stimuli, item pools, counterbalancing schemes, and task code with a DOI.
- Preregistration (where applicable). For confirmatory tests and pre-committed model comparisons, link a preregistration; keep confirmatory vs. exploratory consistent with it.
- Elsevier declarations. Complete the declaration of competing interest, funding/role statement, author contributions, and any required ethics/consent statements per Elsevier policy.
Build-it-right checklist
- Data deposited with a DOI + a codebook/data dictionary
- Model-fitting code deposited; all fits regenerate in a fresh session (run log included)
- Analysis scripts deposited; seeds set, package versions pinned
- Materials (stimuli, item pools, task/counterbalancing) deposited with a DOI
- Preregistration linked (where applicable); confirmatory vs. exploratory consistent
- Research-data statement + competing-interest declaration + funding/contributions completed
- Any restriction on sharing clearly justified (what is withheld, why, and the access path)
Restrictions (handle honestly)
- If data/materials cannot be fully shared (sensitive populations, licensed/proprietary stimuli, IRB limits), state exactly what is withheld, why, and how others can access or approximate it (application path, synthetic data, code release). Code transparency is usually still expected even when data are restricted.
Reproducibility statement — worked draft (illustrative)
A model statement for the recognition-memory program; confirm required headings on the official page.
Open Practices
Data: Trial-level confidence-ROC data for Experiments 1-3 are at OSF
(DOI 10.XXXX/osf.io/abcde), with a codebook.
Model code: The UVSD/DPSD fitting code (R/Stan) reproduces all reported fits,
model-comparison values, and figures in a fresh session; a seeded
run log and pinned environment are included (DOI 10.XXXX/.../fghij).
Materials: Stimulus pools, list construction, and task code are deposited
(DOI 10.XXXX/osf.io/klmno).
Preregistration: The model space and comparison criteria were preregistered
before data collection (osf.io/pqrst); one post hoc bias analysis
is reported as exploratory.
Declarations: Competing interests: none. Funding and author contributions as
stated. (If applicable: data-sharing restriction + access path.)
Transparency-readiness decision table
| Situation | What to deposit / state |
|---|---|
| Fully shareable data + model code + materials | DOIs for each + a fresh-session run log |
| Sensitive human data | synthetic/aggregated data + IRB-gated access path; still share model code |
| Licensed/proprietary stimuli | share what the license allows; cite source; share task/model code |
| Secondary/third-party dataset | link source, share derivation + fitting scripts, document version |
| "Available on request" | replace with a persistent DOI before submission |
Reviewer / editor pushback and the venue fix
- "I can't reproduce your model fits" → ship seeded model code + a pinned environment + a fresh-session run log; the fits must regenerate, not just the data exist.
- "No DOI, just a personal link" → swap transient links for persistent identifiers (OSF, Mendeley Data, Zenodo).
- "Statement says open but the repo is empty" → deposit first, write the statement from live DOIs.
- "Competing-interest/data statement missing" → complete the Elsevier declarations before upload.
Anti-patterns
- Sharing data but not the model-fitting code (the fits cannot be reproduced)
- "Available on request" instead of a persistent identifier
- Code that does not regenerate the reported fits in a fresh session
- Claiming a sharing restriction without a justification or an access path
- Omitting the Elsevier competing-interest / research-data declarations
Output format
【Open data】deposited + DOI + data dictionary? [Y/N]
【Model code】deposited + fits regenerate in a fresh session? [Y/N]
【Analysis scripts】seeded + versions pinned? [Y/N]
【Materials】deposited + DOI? [Y/N]
【Preregistration】linked + consistent (where applicable)? [Y/N/NA]
【Elsevier declarations】competing interest + research-data + funding? [Y/N]
【Next】cogpsych-review-process
Supplementary resources
../../resources/external_tools.md— OSF, Mendeley Data, Zenodo, Stan/JAGS,renv, preregistration templates../../resources/official-source-map.md— Elsevier research-data and code-sharing policy
Version History
- 1839142 Current 2026-07-05 12:37
