Agent Skills
› openai/plugins
› mgnify-skill
mgnify-skill
GitHub通过调用脚本向MGnify API提交精简请求，获取微生物组研究、样本及生物群落的元数据。默认返回Markdown摘要，支持按ID或群落类型窄化查询，适用于需要简洁MGnify总结的场景。
Trigger Scenarios
用户希望获取MGnify的微生物组研究、样本或群落数据的简要总结
用户需要查询特定研究 accession、样本 accession 或 biome 的元信息
Install
npx skills add openai/plugins --skill mgnify-skill -g -y
SKILL.md
Frontmatter
{
"name": "mgnify-skill",
"description": "Submit compact MGnify API requests for microbiome studies, samples, and biome metadata. Use when a user wants concise MGnify summaries"
}
Operating rules
- Use
scripts/rest_request.pyfor all MGnify calls. - Use
base_url=https://www.ebi.ac.uk/metagenomics/api/v1. - MGnify uses JSON:API-style responses. Prefer
record_path=datafor collection endpoints. - Keep requests narrow by study accession, sample accession, or biome whenever possible.
- Re-run requests in long conversations instead of relying on older tool output.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Return raw JSON only if the user explicitly asks for machine-readable output.
- Prefer these paths:
studies,samples, andbiomes.
Input
- Read one JSON object from stdin.
- Required fields:
base_url,path - Optional fields:
method,params,headers,json_body,form_body,record_path,response_format,max_items,max_depth,timeout_sec,save_raw,raw_output_path - Common MGnify patterns:
{"base_url":"https://www.ebi.ac.uk/metagenomics/api/v1","path":"studies","params":{"page_size":10},"record_path":"data","max_items":10}{"base_url":"https://www.ebi.ac.uk/metagenomics/api/v1","path":"biomes","params":{"page_size":10},"record_path":"data","max_items":10}
Output
- Success returns
ok,source,path,method,status_code,warnings, and either compactrecordsor a compactsummary. - Use
raw_output_pathwhensave_raw=true. - Failure returns
ok=falsewitherror.codeanderror.message.
Execution
echo '{"base_url":"https://www.ebi.ac.uk/metagenomics/api/v1","path":"studies","params":{"page_size":10},"record_path":"data","max_items":10}' | python scripts/rest_request.py
References
- No additional runtime references are required; keep the import package limited to this file and
scripts/rest_request.py.
Version History
- 11c74d6 Current 2026-07-19 09:38
