Agent Skills
› openai/plugins
› proteomexchange-skill
proteomexchange-skill
GitHub用于向ProteomeXchange PROXI API提交数据集、蛋白质等资源的紧凑查询请求。通过脚本执行并返回Markdown摘要，支持按标识符精确查找或获取集合列表，适用于需要简洁数据概览的场景。
Trigger Scenarios
用户需要获取蛋白质组学数据集的简要信息
用户希望查询特定的蛋白质、肽段形式或光谱数据
用户请求USI示例或库信息的快速总结
Install
npx skills add openai/plugins --skill proteomexchange-skill -g -y
SKILL.md
Frontmatter
{
"name": "proteomexchange-skill",
"description": "Submit compact ProteomeXchange PROXI requests for datasets, libraries, peptidoforms, proteins, PSMs, spectra, and USI examples. Use when a user wants concise PROXI summaries"
}
Operating rules
- Use
scripts/rest_request.pyfor all ProteomeXchange PROXI calls. - Use
base_url=https://proteomecentral.proteomexchange.org/api/proxi/v0.1. - Collection endpoints are better with
max_items=10; targeted identifier lookups usually do not needmax_items. - Keep requests narrow by identifier, spectrum, or dataset whenever possible.
- Re-run requests in long conversations instead of relying on older tool output.
- Treat displayed
...in tool previews as UI truncation, not literal request content.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Prefer these paths:
datasets,datasets/<identifier>,libraries,peptidoforms,proteins,psms,spectra, andusi_examples. - If the user needs the full payload, set
save_raw=trueand report the saved file path.
Input
- Read one JSON object from stdin.
- Required fields:
base_url,path - Optional fields:
method,params,headers,json_body,form_body,record_path,response_format,max_items,max_depth,timeout_sec,save_raw,raw_output_path - Common PROXI patterns:
{"base_url":"https://proteomecentral.proteomexchange.org/api/proxi/v0.1","path":"datasets","max_items":10}{"base_url":"https://proteomecentral.proteomexchange.org/api/proxi/v0.1","path":"datasets/PXD000001"}{"base_url":"https://proteomecentral.proteomexchange.org/api/proxi/v0.1","path":"usi_examples","max_items":10}
Output
- Success returns
ok,source,path,method,status_code,warnings, and either compactrecordsor a compactsummary. - Use
raw_output_pathwhensave_raw=true. - Failure returns
ok=falsewitherror.codeanderror.message.
Execution
echo '{"base_url":"https://proteomecentral.proteomexchange.org/api/proxi/v0.1","path":"datasets","max_items":10}' | python scripts/rest_request.py
References
- No additional runtime references are required; keep the import package limited to this file and
scripts/rest_request.py.
Version History
- 11c74d6 Current 2026-07-19 09:39
