Agent Skills
› openai/plugins
› reactome-skill
reactome-skill
GitHub用于向Reactome ContentService提交紧凑的请求，获取通路、事件、参与者及搜索数据。通过脚本生成简洁的Markdown摘要或保存原始JSON，支持路径查询与参数配置。
Trigger Scenarios
用户需要查询特定的生物通路或反应事件
用户希望获取基因产物或参与者的简要信息
用户请求对Reactome数据进行搜索或图表相关查询
Install
npx skills add openai/plugins --skill reactome-skill -g -y
SKILL.md
Frontmatter
{
"name": "reactome-skill",
"description": "Submit compact Reactome ContentService requests for pathway, event, participant, search, and diagram-related data. Use when a user wants concise Reactome summaries"
}
Operating rules
- Use
scripts/rest_request.pyfor all Reactome ContentService calls. - Use
base_url=https://reactome.org/ContentService. - Single pathway or event lookups usually do not need
max_items; list-style pathway membership calls are better withmax_items=10. - Send
Accept: application/jsoninheaderswhen requesting JSON. - Re-run requests in long conversations instead of relying on older tool output.
- Treat displayed
...in tool previews as UI truncation, not literal request content.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Prefer these paths:
data/query/<eventId>,data/pathways/low/entity/<identifier>,data/participants/<eventId>, and search endpoints. - If the user needs the full payload, set
save_raw=trueand report the saved file path.
Input
- Read one JSON object from stdin.
- Required fields:
base_url,path - Optional fields:
method,params,headers,json_body,form_body,record_path,response_format,max_items,max_depth,timeout_sec,save_raw,raw_output_path - Common Reactome patterns:
{"base_url":"https://reactome.org/ContentService","path":"data/query/R-HSA-199420","headers":{"Accept":"application/json"}}{"base_url":"https://reactome.org/ContentService","path":"data/pathways/low/entity/P38398","params":{"species":"Homo sapiens"},"headers":{"Accept":"application/json"},"max_items":10}{"base_url":"https://reactome.org/ContentService","path":"data/participants/R-HSA-199420","headers":{"Accept":"application/json"},"max_items":10}
Output
- Success returns
ok,source,path,method,status_code,warnings, and either compactrecordsor a compactsummary. - Use
raw_output_pathwhensave_raw=true. - Failure returns
ok=falsewitherror.codeanderror.message.
Execution
echo '{"base_url":"https://reactome.org/ContentService","path":"data/query/R-HSA-199420","headers":{"Accept":"application/json"}}' | python scripts/rest_request.py
References
- No additional runtime references are required; keep the import package limited to this file and
scripts/rest_request.py.
Version History
- 11c74d6 Current 2026-07-19 09:39
