Agent Skills
› companion-inc/feynman
› scvi-tools
scvi-tools
GitHub用于运行 scvi-tools 单细胞分析工作流，支持 scVI/scANVI 设置、潜变量嵌入、批次校正、差异表达及可重复的 AnnData 分析。
Trigger Scenarios
scVI/scANVI 模型设置
单细胞数据批次校正
差异表达分析
细胞注释
AnnData 可重复性分析
Install
npx skills add companion-inc/feynman --skill scvi-tools -g -y
SKILL.md
Frontmatter
{
"name": "scvi-tools",
"description": "Run scvi-tools single-cell workflows. Use when a task asks for scVI\/scANVI setup, latent embeddings, batch correction, differential expression, cell annotation, or reproducible AnnData analysis."
}
scvi-tools
Use this skill for reproducible scvi-tools analysis.
Workflow:
- Record AnnData path, organism, assay, batch keys, label keys, covariates, train/test split, and filtering choices.
- Verify Python environment, GPU/CPU route, package version, and data availability before training.
- Save preprocessing notebook, model parameters, training logs, latent embeddings, differential-expression tables, and plots.
- Check batch mixing, biological separation, marker consistency, and sensitivity to preprocessing choices.
- Attach exact commands and artifact paths to the final summary.
Keep raw counts, normalized values, and model-derived latent variables clearly separated.
Version History
- 54d08a3 Current 2026-07-25 07:16
