Agent Skillssynthetic-sciences/openscience › physics-visualization

physics-visualization

GitHub

用于生成出版级质量的物理学科普图表,支持矢量场、流线、等高线、3D曲面及动画等可视化类型。内置LaTeX渲染与期刊标准格式配置,适用于电磁学、流体力学等领域的科研数据展示。

backend/cli/skills/physics/physics-visualization/SKILL.md synthetic-sciences/openscience

触发场景

需要生成物理领域的高清科学插图 绘制矢量场或流线图 创建包含LaTeX公式的期刊投稿图表

安装

npx skills add synthetic-sciences/openscience --skill physics-visualization -g -y
更多选项

非标准路径

npx skills add https://github.com/synthetic-sciences/openscience/tree/main/backend/cli/skills/physics/physics-visualization -g -y

不安装直接使用

npx skills use synthetic-sciences/openscience@physics-visualization

指定 Agent (Claude Code)

npx skills add synthetic-sciences/openscience --skill physics-visualization -a claude-code -g -y

安装 repo 全部 skill

npx skills add synthetic-sciences/openscience --all -g -y

预览 repo 内 skill

npx skills add synthetic-sciences/openscience --list

SKILL.md

Frontmatter
{
    "name": "physics-visualization",
    "tags": [
        "Visualization",
        "Plotting",
        "Physics",
        "Publication",
        "Matplotlib",
        "Animation"
    ],
    "author": "Synthetic Sciences",
    "license": "MIT",
    "version": "1.0.0",
    "category": "physics",
    "description": "Publication-quality physics plots — vector fields, streamlines, contour maps, 3D surfaces, phase space, spectrograms, and animations. Optimized for journal submission with LaTeX labels, proper colormaps, and multi-panel layouts.",
    "dependencies": [
        "matplotlib>=3.7.0",
        "numpy>=1.24.0"
    ]
}

Physics Visualization

Overview

Generate publication-quality figures for physics: vector fields, streamlines, contour plots, 3D surfaces, phase diagrams, spectrograms, and animations. All plots use LaTeX rendering, proper colormaps, and journal-ready formatting.

When to Use

  • Any physics result that needs a figure
  • Vector fields (E&M, fluid flow, gravitational fields)
  • Contour/heatmap plots (potential fields, temperature distributions, wavefunctions)
  • Phase space plots (trajectories, Poincare sections)
  • 3D surface plots (energy landscapes, wavefunctions)
  • Animations (time-evolving systems)
  • Multi-panel comparison figures

Setup

import numpy as np
import matplotlib
matplotlib.use('Agg')  # non-interactive backend for scripts
import matplotlib.pyplot as plt
from matplotlib import cm
from mpl_toolkits.mplot3d import Axes3D

# Publication-quality defaults
plt.rcParams.update({
    'font.size': 12,
    'axes.labelsize': 14,
    'axes.titlesize': 15,
    'xtick.labelsize': 11,
    'ytick.labelsize': 11,
    'legend.fontsize': 11,
    'figure.dpi': 150,
    'savefig.dpi': 300,
    'savefig.bbox': 'tight',
    'axes.grid': True,
    'grid.alpha': 0.3,
    'lines.linewidth': 1.5,
})

# Enable LaTeX if available
try:
    plt.rcParams.update({
        'text.usetex': True,
        'font.family': 'serif',
    })
except:
    pass  # fallback to mathtext

Core Plot Types

1. Vector Field

def plot_vector_field(ax, X, Y, U, V, title='', normalize=True, cmap='viridis'):
    """Plot a 2D vector field with magnitude coloring."""
    magnitude = np.sqrt(U**2 + V**2)
    if normalize:
        U_n = U / (magnitude + 1e-10)
        V_n = V / (magnitude + 1e-10)
    else:
        U_n, V_n = U, V

    q = ax.quiver(X, Y, U_n, V_n, magnitude, cmap=cmap, alpha=0.8)
    plt.colorbar(q, ax=ax, label='|F|')
    ax.set_title(title)
    ax.set_aspect('equal')
    return q

# Example: Electric dipole field
x = np.linspace(-3, 3, 20)
y = np.linspace(-3, 3, 20)
X, Y = np.meshgrid(x, y)

# Dipole at (±0.5, 0)
def dipole_field(X, Y, d=0.5):
    r_plus = np.sqrt((X-d)**2 + Y**2)
    r_minus = np.sqrt((X+d)**2 + Y**2)
    Ex = (X-d)/r_plus**3 - (X+d)/r_minus**3
    Ey = Y/r_plus**3 - Y/r_minus**3
    return Ex, Ey

Ex, Ey = dipole_field(X, Y)
fig, ax = plt.subplots(figsize=(8, 8))
plot_vector_field(ax, X, Y, Ex, Ey, title='Electric Dipole Field')
ax.set_xlabel('x [m]')
ax.set_ylabel('y [m]')
plt.savefig('vector_field.png', dpi=150, bbox_inches='tight')

2. Streamlines

fig, ax = plt.subplots(figsize=(10, 8))
x_fine = np.linspace(-3, 3, 100)
y_fine = np.linspace(-3, 3, 100)
X_f, Y_f = np.meshgrid(x_fine, y_fine)
Ex_f, Ey_f = dipole_field(X_f, Y_f)
magnitude = np.sqrt(Ex_f**2 + Ey_f**2)

strm = ax.streamplot(X_f, Y_f, Ex_f, Ey_f, color=np.log10(magnitude+1e-3),
                      cmap='inferno', density=2, linewidth=1, arrowsize=1.5)
plt.colorbar(strm.lines, ax=ax, label=r'$\log_{10}|E|$')
ax.plot([-0.5, 0.5], [0, 0], 'ro', markersize=10, label='Charges')
ax.set_xlabel('x [m]')
ax.set_ylabel('y [m]')
ax.set_title('Electric Field Streamlines')
ax.legend()
plt.savefig('streamlines.png', dpi=150, bbox_inches='tight')

3. Contour / Heatmap

def plot_contour(ax, X, Y, Z, title='', levels=20, cmap='RdBu_r', symmetric=True):
    """Contour plot with optional symmetric colorbar (good for potentials)."""
    if symmetric:
        vmax = np.max(np.abs(Z))
        vmin = -vmax
    else:
        vmin, vmax = Z.min(), Z.max()

    cf = ax.contourf(X, Y, Z, levels=levels, cmap=cmap, vmin=vmin, vmax=vmax)
    cs = ax.contour(X, Y, Z, levels=levels, colors='k', linewidths=0.3, alpha=0.5)
    plt.colorbar(cf, ax=ax, label=title)
    ax.clabel(cs, inline=True, fontsize=8, fmt='%.1f')
    ax.set_aspect('equal')
    return cf

# Example: 2D wavefunction |ψ|²
r = np.linspace(-5, 5, 200)
X, Y = np.meshgrid(r, r)
R = np.sqrt(X**2 + Y**2)
# Hydrogen 2p orbital (simplified)
psi = R * np.exp(-R/2) * X / R  # p_x orbital
psi_sq = np.abs(psi)**2

fig, ax = plt.subplots(figsize=(8, 7))
plot_contour(ax, X, Y, psi_sq, title=r'$|\psi_{2p}|^2$', symmetric=False, cmap='hot')
ax.set_xlabel('x [a₀]')
ax.set_ylabel('y [a₀]')
ax.set_title(r'Hydrogen $2p_x$ Probability Density')
plt.savefig('wavefunction.png', dpi=150, bbox_inches='tight')

4. 3D Surface

fig = plt.figure(figsize=(10, 8))
ax = fig.add_subplot(111, projection='3d')

# Energy landscape
x = np.linspace(-2, 2, 100)
y = np.linspace(-2, 2, 100)
X, Y = np.meshgrid(x, y)
Z = (X**2 - 1)**2 + Y**2  # double-well potential

surf = ax.plot_surface(X, Y, Z, cmap='coolwarm', alpha=0.8,
                       linewidth=0, antialiased=True)
ax.set_xlabel('x')
ax.set_ylabel('y')
ax.set_zlabel('V(x,y)')
ax.set_title('Double-Well Potential')
fig.colorbar(surf, ax=ax, shrink=0.6, label='V')
plt.savefig('surface_3d.png', dpi=150, bbox_inches='tight')

5. Animation

from matplotlib.animation import FuncAnimation, PillowWriter

def create_animation(update_func, n_frames, fig, interval=50, filename='animation.gif'):
    """Create and save an animation."""
    anim = FuncAnimation(fig, update_func, frames=n_frames, interval=interval, blit=True)
    writer = PillowWriter(fps=1000/interval)
    anim.save(filename, writer=writer)
    print(f"Animation saved: {filename}")
    return anim

# Example: wave propagation
fig, ax = plt.subplots(figsize=(10, 4))
x = np.linspace(0, 10, 500)
line, = ax.plot(x, np.sin(x), 'b-', linewidth=2)
ax.set_ylim(-1.5, 1.5)
ax.set_xlabel('x')
ax.set_ylabel('u(x,t)')
time_text = ax.text(0.02, 0.95, '', transform=ax.transAxes)

def update(frame):
    t = frame * 0.05
    y = np.sin(2*np.pi*(x - t)) * np.exp(-0.1*t)
    line.set_ydata(y)
    time_text.set_text(f't = {t:.2f}')
    return line, time_text

create_animation(update, 200, fig, interval=33, filename='wave.gif')

6. Multi-Panel Figure

def multi_panel(n_rows, n_cols, figsize=None, sharex=False, sharey=False):
    """Create a multi-panel figure with consistent styling."""
    if figsize is None:
        figsize = (5*n_cols, 4*n_rows)
    fig, axes = plt.subplots(n_rows, n_cols, figsize=figsize,
                              sharex=sharex, sharey=sharey)
    # Add panel labels (a), (b), (c), ...
    if n_rows * n_cols > 1:
        for i, ax in enumerate(np.atleast_1d(axes).flat):
            label = chr(ord('a') + i)
            ax.text(-0.12, 1.05, f'({label})', transform=ax.transAxes,
                    fontsize=14, fontweight='bold', va='top')
    return fig, axes

Colormap Guide

Data Type Recommended Colormap Why
Sequential (magnitude, density) viridis, plasma, inferno Perceptually uniform, colorblind-safe
Diverging (potential, temperature anomaly) RdBu_r, coolwarm Symmetric around zero
Cyclic (phase, angle) twilight, hsv Wraps around
Binary (positive/negative) bwr Clear sign distinction

Never use jet or rainbow — they are not perceptually uniform and mislead.

Save Format Guide

Format When to Use
PNG (300 dpi) General use, presentations
PDF Journal submission, vector graphics
SVG Web, editable vector
EPS Legacy journals requiring EPS

Always save both PNG and PDF:

plt.savefig('figure.png', dpi=300, bbox_inches='tight')
plt.savefig('figure.pdf', bbox_inches='tight')

版本历史

  • e9844a4 当前 2026-07-11 17:32

依赖关系

  • required matplotlib>=3.7.0
  • required numpy>=1.24.0

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元信息

文件数
0
版本
740b38c
Hash
b6fc9b61
收录时间
2026-07-11 17:32

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