Agent Skillssynthetic-sciences/openscience › physics-visualization

physics-visualization

GitHub

生成符合出版级标准的物理学科图表,包括矢量场、流线图、等高线图、3D曲面及动画。支持LaTeX标签与多面板布局,专为期刊投稿优化,适用于电磁学、流体力学等领域的可视化需求。

backend/cli/skills/physics/physics-visualization/SKILL.md synthetic-sciences/openscience

Trigger Scenarios

需要绘制物理矢量场或流线图 生成用于论文发表的3D表面或相空间图 创建包含LaTeX公式的科学可视化图表

Install

npx skills add synthetic-sciences/openscience --skill physics-visualization -g -y
More Options

Non-standard path

npx skills add https://github.com/synthetic-sciences/openscience/tree/main/backend/cli/skills/physics/physics-visualization -g -y

Use without installing

npx skills use synthetic-sciences/openscience@physics-visualization

指定 Agent (Claude Code)

npx skills add synthetic-sciences/openscience --skill physics-visualization -a claude-code -g -y

安装 repo 全部 skill

npx skills add synthetic-sciences/openscience --all -g -y

预览 repo 内 skill

npx skills add synthetic-sciences/openscience --list

SKILL.md

Frontmatter
{
    "name": "physics-visualization",
    "tags": [
        "Visualization",
        "Plotting",
        "Physics",
        "Publication",
        "Matplotlib",
        "Animation"
    ],
    "author": "Synthetic Sciences",
    "license": "MIT",
    "version": "1.0.0",
    "category": "physics",
    "description": "Publication-quality physics plots — vector fields, streamlines, contour maps, 3D surfaces, phase space, spectrograms, and animations. Optimized for journal submission with LaTeX labels, proper colormaps, and multi-panel layouts.",
    "dependencies": [
        "matplotlib>=3.7.0",
        "numpy>=1.24.0"
    ]
}

Physics Visualization

Overview

Generate publication-quality figures for physics: vector fields, streamlines, contour plots, 3D surfaces, phase diagrams, spectrograms, and animations. All plots use LaTeX rendering, proper colormaps, and journal-ready formatting.

When to Use

  • Any physics result that needs a figure
  • Vector fields (E&M, fluid flow, gravitational fields)
  • Contour/heatmap plots (potential fields, temperature distributions, wavefunctions)
  • Phase space plots (trajectories, Poincare sections)
  • 3D surface plots (energy landscapes, wavefunctions)
  • Animations (time-evolving systems)
  • Multi-panel comparison figures

Setup

import numpy as np
import matplotlib
matplotlib.use('Agg')  # non-interactive backend for scripts
import matplotlib.pyplot as plt
from matplotlib import cm
from mpl_toolkits.mplot3d import Axes3D

# Publication-quality defaults
plt.rcParams.update({
    'font.size': 12,
    'axes.labelsize': 14,
    'axes.titlesize': 15,
    'xtick.labelsize': 11,
    'ytick.labelsize': 11,
    'legend.fontsize': 11,
    'figure.dpi': 150,
    'savefig.dpi': 300,
    'savefig.bbox': 'tight',
    'axes.grid': True,
    'grid.alpha': 0.3,
    'lines.linewidth': 1.5,
})

# Enable LaTeX if available
try:
    plt.rcParams.update({
        'text.usetex': True,
        'font.family': 'serif',
    })
except:
    pass  # fallback to mathtext

Core Plot Types

1. Vector Field

def plot_vector_field(ax, X, Y, U, V, title='', normalize=True, cmap='viridis'):
    """Plot a 2D vector field with magnitude coloring."""
    magnitude = np.sqrt(U**2 + V**2)
    if normalize:
        U_n = U / (magnitude + 1e-10)
        V_n = V / (magnitude + 1e-10)
    else:
        U_n, V_n = U, V

    q = ax.quiver(X, Y, U_n, V_n, magnitude, cmap=cmap, alpha=0.8)
    plt.colorbar(q, ax=ax, label='|F|')
    ax.set_title(title)
    ax.set_aspect('equal')
    return q

# Example: Electric dipole field
x = np.linspace(-3, 3, 20)
y = np.linspace(-3, 3, 20)
X, Y = np.meshgrid(x, y)

# Dipole at (±0.5, 0)
def dipole_field(X, Y, d=0.5):
    r_plus = np.sqrt((X-d)**2 + Y**2)
    r_minus = np.sqrt((X+d)**2 + Y**2)
    Ex = (X-d)/r_plus**3 - (X+d)/r_minus**3
    Ey = Y/r_plus**3 - Y/r_minus**3
    return Ex, Ey

Ex, Ey = dipole_field(X, Y)
fig, ax = plt.subplots(figsize=(8, 8))
plot_vector_field(ax, X, Y, Ex, Ey, title='Electric Dipole Field')
ax.set_xlabel('x [m]')
ax.set_ylabel('y [m]')
plt.savefig('vector_field.png', dpi=150, bbox_inches='tight')

2. Streamlines

fig, ax = plt.subplots(figsize=(10, 8))
x_fine = np.linspace(-3, 3, 100)
y_fine = np.linspace(-3, 3, 100)
X_f, Y_f = np.meshgrid(x_fine, y_fine)
Ex_f, Ey_f = dipole_field(X_f, Y_f)
magnitude = np.sqrt(Ex_f**2 + Ey_f**2)

strm = ax.streamplot(X_f, Y_f, Ex_f, Ey_f, color=np.log10(magnitude+1e-3),
                      cmap='inferno', density=2, linewidth=1, arrowsize=1.5)
plt.colorbar(strm.lines, ax=ax, label=r'$\log_{10}|E|$')
ax.plot([-0.5, 0.5], [0, 0], 'ro', markersize=10, label='Charges')
ax.set_xlabel('x [m]')
ax.set_ylabel('y [m]')
ax.set_title('Electric Field Streamlines')
ax.legend()
plt.savefig('streamlines.png', dpi=150, bbox_inches='tight')

3. Contour / Heatmap

def plot_contour(ax, X, Y, Z, title='', levels=20, cmap='RdBu_r', symmetric=True):
    """Contour plot with optional symmetric colorbar (good for potentials)."""
    if symmetric:
        vmax = np.max(np.abs(Z))
        vmin = -vmax
    else:
        vmin, vmax = Z.min(), Z.max()

    cf = ax.contourf(X, Y, Z, levels=levels, cmap=cmap, vmin=vmin, vmax=vmax)
    cs = ax.contour(X, Y, Z, levels=levels, colors='k', linewidths=0.3, alpha=0.5)
    plt.colorbar(cf, ax=ax, label=title)
    ax.clabel(cs, inline=True, fontsize=8, fmt='%.1f')
    ax.set_aspect('equal')
    return cf

# Example: 2D wavefunction |ψ|²
r = np.linspace(-5, 5, 200)
X, Y = np.meshgrid(r, r)
R = np.sqrt(X**2 + Y**2)
# Hydrogen 2p orbital (simplified)
psi = R * np.exp(-R/2) * X / R  # p_x orbital
psi_sq = np.abs(psi)**2

fig, ax = plt.subplots(figsize=(8, 7))
plot_contour(ax, X, Y, psi_sq, title=r'$|\psi_{2p}|^2$', symmetric=False, cmap='hot')
ax.set_xlabel('x [a₀]')
ax.set_ylabel('y [a₀]')
ax.set_title(r'Hydrogen $2p_x$ Probability Density')
plt.savefig('wavefunction.png', dpi=150, bbox_inches='tight')

4. 3D Surface

fig = plt.figure(figsize=(10, 8))
ax = fig.add_subplot(111, projection='3d')

# Energy landscape
x = np.linspace(-2, 2, 100)
y = np.linspace(-2, 2, 100)
X, Y = np.meshgrid(x, y)
Z = (X**2 - 1)**2 + Y**2  # double-well potential

surf = ax.plot_surface(X, Y, Z, cmap='coolwarm', alpha=0.8,
                       linewidth=0, antialiased=True)
ax.set_xlabel('x')
ax.set_ylabel('y')
ax.set_zlabel('V(x,y)')
ax.set_title('Double-Well Potential')
fig.colorbar(surf, ax=ax, shrink=0.6, label='V')
plt.savefig('surface_3d.png', dpi=150, bbox_inches='tight')

5. Animation

from matplotlib.animation import FuncAnimation, PillowWriter

def create_animation(update_func, n_frames, fig, interval=50, filename='animation.gif'):
    """Create and save an animation."""
    anim = FuncAnimation(fig, update_func, frames=n_frames, interval=interval, blit=True)
    writer = PillowWriter(fps=1000/interval)
    anim.save(filename, writer=writer)
    print(f"Animation saved: {filename}")
    return anim

# Example: wave propagation
fig, ax = plt.subplots(figsize=(10, 4))
x = np.linspace(0, 10, 500)
line, = ax.plot(x, np.sin(x), 'b-', linewidth=2)
ax.set_ylim(-1.5, 1.5)
ax.set_xlabel('x')
ax.set_ylabel('u(x,t)')
time_text = ax.text(0.02, 0.95, '', transform=ax.transAxes)

def update(frame):
    t = frame * 0.05
    y = np.sin(2*np.pi*(x - t)) * np.exp(-0.1*t)
    line.set_ydata(y)
    time_text.set_text(f't = {t:.2f}')
    return line, time_text

create_animation(update, 200, fig, interval=33, filename='wave.gif')

6. Multi-Panel Figure

def multi_panel(n_rows, n_cols, figsize=None, sharex=False, sharey=False):
    """Create a multi-panel figure with consistent styling."""
    if figsize is None:
        figsize = (5*n_cols, 4*n_rows)
    fig, axes = plt.subplots(n_rows, n_cols, figsize=figsize,
                              sharex=sharex, sharey=sharey)
    # Add panel labels (a), (b), (c), ...
    if n_rows * n_cols > 1:
        for i, ax in enumerate(np.atleast_1d(axes).flat):
            label = chr(ord('a') + i)
            ax.text(-0.12, 1.05, f'({label})', transform=ax.transAxes,
                    fontsize=14, fontweight='bold', va='top')
    return fig, axes

Colormap Guide

Data Type Recommended Colormap Why
Sequential (magnitude, density) viridis, plasma, inferno Perceptually uniform, colorblind-safe
Diverging (potential, temperature anomaly) RdBu_r, coolwarm Symmetric around zero
Cyclic (phase, angle) twilight, hsv Wraps around
Binary (positive/negative) bwr Clear sign distinction

Never use jet or rainbow — they are not perceptually uniform and mislead.

Save Format Guide

Format When to Use
PNG (300 dpi) General use, presentations
PDF Journal submission, vector graphics
SVG Web, editable vector
EPS Legacy journals requiring EPS

Always save both PNG and PDF:

plt.savefig('figure.png', dpi=300, bbox_inches='tight')
plt.savefig('figure.pdf', bbox_inches='tight')

Version History

  • e9844a4 Current 2026-07-11 17:32

Dependencies

  • required matplotlib>=3.7.0
  • required numpy>=1.24.0

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Metadata

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Version
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Hash
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Indexed
2026-07-11 17:32

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