Agent Skills
› openai/plugins
› civic-skill
civic-skill
GitHub用于通过CIViC GraphQL接口提交紧凑查询，进行癌症变异解读模式检查及定向证据检索。支持Schema检查和精准数据获取，默认返回Markdown摘要，适用于生物信息学数据分析场景。
Trigger Scenarios
用户需要查询癌症变异的解释性证据
用户希望获取CIViC数据库的Schema结构
用户请求针对特定实体的靶向证据检索
Install
npx skills add openai/plugins --skill civic-skill -g -y
SKILL.md
Frontmatter
{
"name": "civic-skill",
"description": "Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Use when a user wants concise CIViC summaries"
}
Operating rules
- Use
scripts/civic_graphql.pyfor all CIViC GraphQL work. - Keep selection sets narrow and start with schema or targeted entity queries.
- Use
query_pathfor longer GraphQL documents instead of pasting large inline queries. - Re-run requests in long conversations instead of relying on older tool output.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Return raw JSON only if the user explicitly asks for machine-readable output.
- Prefer sanity, schema, and targeted evidence queries over broad graph dumps.
Input
- Read one JSON object from stdin.
- Required field:
queryorquery_path - Optional fields:
variables,max_items,max_depth,timeout_sec,save_raw,raw_output_path - Common CIViC patterns:
{"query":"query { __typename }"}{"query":"query { __schema { queryType { fields { name } } } }","max_items":20}
Output
- Success returns
ok,source,top_keys, a compactsummary, andraw_output_pathwhensave_raw=true. - Failure returns
ok=falsewitherror.codesuch asinvalid_json,invalid_input,network_error,invalid_response, orgraphql_error.
Execution
echo '{"query":"query { __typename }"}' | python scripts/civic_graphql.py
References
- No additional runtime references are required; keep the import package limited to this file and
scripts/civic_graphql.py.
Version History
- 11c74d6 Current 2026-07-19 09:38
