Agent Skills
› openai/plugins
› epigraphdb-skill
epigraphdb-skill
GitHub封装EpiGraphDB API调用，用于获取本体、文献、孟德尔随机化及基因药物证据的简明摘要。支持连通性检查、分页控制及原始数据保存，适用于生物医学数据查询场景。
Trigger Scenarios
需要查询EpiGraphDB中的生物医学证据
请求生成基因、药物或GWAS的简明总结
验证EpiGraphDB API连通性或元数据
Install
npx skills add openai/plugins --skill epigraphdb-skill -g -y
SKILL.md
Frontmatter
{
"name": "epigraphdb-skill",
"description": "Submit compact EpiGraphDB API requests for ontology, literature, MR, gene-drug, and support-path evidence. Use when a user wants concise EpiGraphDB summaries"
}
Operating rules
- Use
scripts/rest_request.pyfor all EpiGraphDB API calls. - Use
base_url=https://api.epigraphdb.org. - Start with
max_items=10for list-style endpoints; use smaller caps for literature-heavy or pairwise endpoints if the response fans out quickly. - Prefer the connectivity guard endpoints first when endpoint availability matters:
ping,builds, andmeta/api-endpoints. - Re-run requests in long conversations instead of relying on older tool output.
- Treat displayed
...in tool previews as UI truncation, not literal request content.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Prefer targeted paths such as
ontology/gwas-efo,gene/drugs,gene/druggability/ppi,mr, andliterature/gwas. - If the user needs the full payload, set
save_raw=trueand report the saved file path.
Input
- Read one JSON object from stdin.
- Required fields:
base_url,path - Optional fields:
method,params,headers,json_body,form_body,record_path,response_format,max_items,max_depth,timeout_sec,save_raw,raw_output_path - Common EpiGraphDB patterns:
{"base_url":"https://api.epigraphdb.org","path":"ping"}{"base_url":"https://api.epigraphdb.org","path":"ontology/gwas-efo","params":{"trait":"asthma","score_threshold":0.8,"fuzzy":true},"max_items":10}{"base_url":"https://api.epigraphdb.org","path":"gene/drugs","params":{"gene_name":"IL6R"},"max_items":10}
Output
- Success returns
ok,source,path,method,status_code,warnings, and either compactrecordsor a compactsummary. - Use
raw_output_pathwhensave_raw=true. - Failure returns
ok=falsewitherror.codeanderror.message.
Execution
echo '{"base_url":"https://api.epigraphdb.org","path":"ontology/gwas-efo","params":{"trait":"asthma","score_threshold":0.8,"fuzzy":true},"max_items":10}' | python scripts/rest_request.py
References
- No additional runtime references are required; keep the import package limited to this file and
scripts/rest_request.py.
Version History
- 11c74d6 Current 2026-07-19 09:38
