Agent Skills
› companion-inc/feynman
› scgpt
scgpt
GitHub用于单细胞基础模型分析，涵盖嵌入生成、扰动预测、细胞注释及基因程序分析。规范数据记录、预处理、模型验证及结果对比流程，确保元数据与标记基因支持，保障分析可追溯性。
Trigger Scenarios
需要单细胞嵌入向量
进行细胞类型注释
预测基因扰动效应
分析基因调控程序
Install
npx skills add companion-inc/feynman --skill scgpt -g -y
SKILL.md
Frontmatter
{
"name": "scgpt",
"description": "Use scGPT-style single-cell foundation model workflows. Use when a task asks for single-cell embeddings, perturbation prediction, cell annotation, batch transfer, or gene-program analysis."
}
scGPT
Use this skill for single-cell foundation model analysis.
Workflow:
- Record dataset source, organism, modality, preprocessing, gene identifiers, cell labels, and perturbation design.
- Verify model/checkpoint/package availability before running.
- Save AnnData or matrix manifests, preprocessing code, model version, embeddings, predictions, plots, and logs.
- Compare labels or predictions against source metadata, marker genes, perturbation controls, and literature.
- Preserve batch, donor, disease, and assay provenance in every summary table.
Do not present cell-state labels without marker or metadata support.
Version History
- 54d08a3 Current 2026-07-25 07:16
