类库 › PhenoPixel
ikeda042

ikeda042/PhenoPixel

PhenoPixel是一款基于OpenCV的显微镜细胞分析与提取Web应用,支持批量表型分析、荧光图像叠加渲染及ND2文件管理。旨在为科研提供可复现的单细胞提取与批量分析工作流,包含前后端架构及详细引用规范。

ikeda042/PhenoPixel

技术栈

backend python

框架

FastAPI
查看全部依赖 (14)

依赖

NumPy Pillow Pydantic SQLAlchemy aiofiles aiohttp aiosqlite fastmcp greenlet matplotlib nd2reader opencv-python python-multipart uvicorn

frontend javascript

框架

React ^19.2.0

构建工具

Vite ^7.2.4 Webpack ^5.95.0

测试

Playwright ^1.50.0

CSS-in-JS

Emotion ^11.14.0

代码规范

ESLint ^9.39.1
查看全部依赖 (34)

依赖

@chakra-ui/react ^3.30.0 @emotion/styled ^11.14.1 @fontsource/noto-sans-jp ^5.2.8 fflate ^0.8.2 framer-motion ^12.23.26 lucide-react ^0.562.0 react-dom ^19.2.0 react-router-dom ^7.11.0

开发依赖

@docusaurus/core ^3.10.0 @docusaurus/preset-classic ^3.10.0 @docusaurus/theme-mermaid ^3.10.0 @eslint/js ^9.39.1 @mdx-js/react ^3.1.1 @mermaid-js/layout-elk ^0.1.9 @storybook/addon-essentials ^8.6.14 @storybook/addon-interactions ^8.6.14 @storybook/react-vite ^8.6.14 @storybook/test-runner ^0.24.2 @types/react ^19.2.5 @types/react-dom ^19.2.3 @vitejs/plugin-react ^5.1.1 ajv ^8.20.0 concurrently ^9.2.1 eslint-plugin-react-hooks ^7.0.1 eslint-plugin-react-refresh ^0.4.24 globals ^16.5.0 http-server ^14.1.1 katex ^0.16.45 rehype-katex ^7.0.1 remark-math ^6.0.0 storybook ^8.6.14 typescript ^5.9.3 typescript-eslint ^8.51.0 wait-on ^8.0.2

截图

Manual Label 1 Overlay Fluo montage
ND2 manager
Cell extraction setup
Auto annotation processing
Extraction results and next actions
Database manager
Database access
Function panel modes
Annotation cleanup
Annotation labeling
Annotation labeling multiple
Bulk engine selection
Bulk engine analysis
Bulk engine analysis modes
Bulk engine heatmap example
Centerline fitting
Peak-vector heatmap construction

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