Agent Skills
› openai/plugins
› pride-skill
pride-skill
GitHub用于向PRIDE Archive API发起请求，获取蛋白质组学项目的发现信息和元数据摘要。支持按项目搜索或查询特定PXD编号，默认返回简洁Markdown总结，适用于科研数据检索场景。
Trigger Scenarios
用户需要查找蛋白质组学研究项目
用户希望获取PRIDE数据库中的项目元数据
Install
npx skills add openai/plugins --skill pride-skill -g -y
SKILL.md
Frontmatter
{
"name": "pride-skill",
"description": "Submit compact PRIDE Archive API requests for proteomics project discovery and project-level metadata. Use when a user wants concise PRIDE summaries"
}
Operating rules
- Use
scripts/rest_request.pyfor all PRIDE Archive calls. - Use
base_url=https://www.ebi.ac.uk/pride/ws/archive/v2. - Start with
projectsfor discovery and keep page sizes modest. - Prefer project-level metadata lookups over broad archive dumps.
- Re-run requests in long conversations instead of relying on older tool output.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Return raw JSON only if the user explicitly asks for machine-readable output.
- Prefer these paths:
projectsandprojects/<PXD accession>.
Input
- Read one JSON object from stdin.
- Required fields:
base_url,path - Optional fields:
method,params,headers,json_body,form_body,record_path,response_format,max_items,max_depth,timeout_sec,save_raw,raw_output_path - Common PRIDE patterns:
{"base_url":"https://www.ebi.ac.uk/pride/ws/archive/v2","path":"projects","params":{"keyword":"proteomics","pageSize":10},"max_items":10}{"base_url":"https://www.ebi.ac.uk/pride/ws/archive/v2","path":"projects/PXD001357"}
Output
- Success returns
ok,source,path,method,status_code,warnings, and either compactrecordsor a compactsummary. - Use
raw_output_pathwhensave_raw=true. - Failure returns
ok=falsewitherror.codeanderror.message.
Execution
echo '{"base_url":"https://www.ebi.ac.uk/pride/ws/archive/v2","path":"projects","params":{"keyword":"proteomics","pageSize":10},"max_items":10}' | python scripts/rest_request.py
References
- No additional runtime references are required; keep the import package limited to this file and
scripts/rest_request.py.
Version History
- 11c74d6 Current 2026-07-19 09:39
