Agent Skills
› openai/plugins
› ncbi-clinicaltables-skill
ncbi-clinicaltables-skill
GitHub用于通过NCBI Clinical Tables脚本进行人类基因搜索、分页及字段选择，提供简洁的自动补全式基因查询结果。
Trigger Scenarios
用户需要查询人类基因信息
需要进行基因名称或ID的自动补全搜索
请求获取特定基因的详细信息列表
Install
npx skills add openai/plugins --skill ncbi-clinicaltables-skill -g -y
SKILL.md
Frontmatter
{
"name": "ncbi-clinicaltables-skill",
"description": "Submit compact Clinical Tables NCBI Gene requests for human gene lookup, pagination, and field selection. Use when a user wants concise autocomplete-style human gene search results"
}
Operating rules
- Use
scripts/ncbi_gene_clinicaltables.pyfor all Clinical Tables gene searches. - The script accepts
max_items; for search pages, start withcount=10andmax_items=10. - Use
paramsfor endpoint options likedf,ef,sf,q,offset, andcount. - Prefer
ncbi-entrez-skillwhen the user wants general Entrez Gene records rather than autocomplete/search rows. - Page with
offsetinstead of asking for large pulls. - Re-run requests in long conversations instead of relying on older tool output.
- Treat displayed
...in tool previews as UI truncation, not literal request content. - If the user asks for the full payload, set
save_raw=trueand report the saved file path instead of pasting large response arrays into chat.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Return the JSON verbatim only if the user explicitly asks for machine-readable output.
- Use
termsfor the primary search text. - Keep
countmodest and page withoffsetinstead of pulling large result sets at once.
Input
- Read one JSON object from stdin.
- Required field:
terms - Optional fields:
params,max_items,max_depth,timeout_sec,save_raw,raw_output_path - Common NCBI Gene patterns:
{"terms":"TP53","params":{"df":"GeneID,Symbol,description"}}{"terms":"BRCA","params":{"count":10,"df":"chromosome,GeneID,Symbol,description,type_of_gene"},"max_items":10}{"terms":"kinase","params":{"count":10,"offset":10,"df":"GeneID,Symbol,description"},"max_items":10}
Output
- Success returns
ok,source,terms,total,codes,display_rows,extra_fields, and truncation metadata. - Use
raw_output_pathwhensave_raw=true. - Failure returns
ok=falsewitherror.codeanderror.message.
Execution
echo '{"terms":"TP53","params":{"count":10,"df":"GeneID,Symbol,description"},"max_items":10}' | python scripts/ncbi_gene_clinicaltables.py
References
- No additional runtime references are required; keep the import package limited to this file and
scripts/ncbi_gene_clinicaltables.py.
Version History
- 11c74d6 Current 2026-07-19 09:38
