auditing-deid-leakage
GitHub用于审计去标识化临床文本的残留泄露。通过正则、校验和及模型二次扫描检测SSN等敏感信息,发现即阻断发布,确保数据合规。
Trigger Scenarios
Install
npx skills add maziyarpanahi/openmed --skill auditing-deid-leakage -g -y
SKILL.md
Frontmatter
{
"name": "auditing-deid-leakage",
"license": "Apache-2.0",
"metadata": {
"pairs": "after",
"project": "OpenMed",
"version": "1.0",
"category": "de-identification"
},
"description": "Adversarially scan already-de-identified clinical text for residual identifiers and emit a leakage report that blocks release on any hit. Use after OpenMed de-identification when the user asks to verify a redaction, prove no PHI\/PII leaked, gate a dataset before sharing, or run a second-pass detector. Covers format and checksum detectors (SSN, Luhn for card numbers, MRN\/account patterns, emails, phones, dates), entropy heuristics for high-randomness tokens, severity scoring, and a hard block-on-leak rule. This is the verification half of OpenMed's leakage-first ethos. Hand-off: re-run openmed.extract_pii on the de-id output and diff against expectations. License-free, local-first. Pairs after deidentifying-clinical-text."
}
Auditing de-id leakage
De-identification is verified, not assumed. A model-driven redaction can miss a structured identifier (an SSN typo'd with spaces, an account number in a footer, a date in an odd format) — and a single residual identifier defeats the whole release. This skill is the adversarial second pass: scan the output of de-identification for anything that still looks like an identifier, score it, and block release on any leak. It is the verification half of OpenMed's leakage-first ethos — gate on leakage, not on F1.
When to use
- Right after
deidentifying-clinical-text, before the de-identified text leaves a trust boundary (export, share, train, publish). - When the user wants proof that "no PHI leaked," a release gate, or a CI check that fails the build if any identifier survives.
- As a belt-and-suspenders detector independent of the model that produced the redaction — a deterministic checker catches different failures than the NER.
Run this on the de-identified text, not the original. The original is expected to be full of identifiers.
Quick start
Two complementary passes — a deterministic structural scan plus a model second-pass diff:
import re
import openmed
# Synthetic — the de-identified OUTPUT we are auditing for residual leaks.
deid_text = "Patient [NAME] seen on [DATE]. Backup contact 415-555-0184; acct 4111111111111111."
def luhn_ok(digits: str) -> bool:
nums = [int(d) for d in digits]
nums[-2::-2] = [(2 * d - 9 if 2 * d > 9 else 2 * d) for d in nums[-2::-2]]
return sum(nums) % 10 == 0
DETECTORS = {
"SSN": (r"\b\d{3}-\d{2}-\d{4}\b", "critical", None),
"EMAIL": (r"\b[\w.+-]+@[\w-]+\.[\w.-]+\b", "high", None),
"PHONE": (r"\b(?:\+?1[-.\s]?)?\(?\d{3}\)?[-.\s]?\d{3}[-.\s]?\d{4}\b", "high", None),
"DATE": (r"\b\d{1,2}[/-]\d{1,2}[/-]\d{2,4}\b", "medium", None),
"MRN": (r"\bMRN[:#\s]*\d{5,}\b", "high", None),
"CARD": (r"\b(?:\d[ -]?){13,19}\b", "critical", luhn_ok), # checksum-gated
}
findings = []
for label, (pattern, severity, checksum) in DETECTORS.items():
for m in re.finditer(pattern, deid_text, flags=re.IGNORECASE):
token = m.group()
if checksum and not checksum(re.sub(r"\D", "", token)):
continue # fails Luhn -> not a real card number, skip
findings.append({"label": label, "severity": severity,
"start": m.start(), "end": m.end()}) # offsets, not text
# Second-pass model detector: re-run PII extraction on the de-id output.
residual = openmed.extract_pii(deid_text) # PredictionResult
for ent in residual.entities:
findings.append({"label": ent.label, "severity": "high",
"start": ent.start, "end": ent.end})
leaked = bool(findings)
print({"leak": leaked, "count": len(findings)}) # report carries NO plaintext
assert not leaked, "Release BLOCKED: residual identifiers detected."
Note what the report records: labels, severities, and offsets — never the leaked plaintext. Echoing the leaked identifier into a report or log re-creates the exact PHI exposure you are auditing for.
Workflow
- Run deterministic format + checksum detectors on the de-identified text: SSN, email, phone, dates, MRN/account/ID patterns, and card numbers gated by the Luhn checksum so random 16-digit strings don't false-positive. These catch structured identifiers a model may skip.
- Add an entropy heuristic for high-randomness tokens (long base36/base64 strings, hex blobs) that match no known format but look like keys, tokens, or record locators. Flag for review rather than auto-block; entropy is noisy.
- Run a model second-pass: re-run
openmed.extract_piion the output and treat any returned entity as a residual leak. Because it's a different detector than the one that did the redaction, it catches different misses. - Score severity. critical (SSN, card, full DOB+name co-occurrence) > high (email, phone, MRN, names) > medium (partial dates) > low (entropy-only).
- Block on any leak. The gate is binary for release: if
findingsis non-empty at high/critical, fail the export. Surface a no-PHI report (counts + offsets + severities) so a reviewer can locate and re-redact.
Hand-off to / from OpenMed
- From
deidentifying-clinical-text: this skill consumesresult.deidentified_text. Never auditresult.original_text. - OpenMed second-pass detector:
from openmed import extract_pii— re-run it on the de-id output and diff. Equivalent MCP/REST surfaces detect PII spans for the same purpose. Any span returned on already-de-identified text is a leak. - To
reviewing-reidentification-risk: zero direct-identifier leaks is necessary but not sufficient — quasi-identifiers (age + ZIP + date) can still re-identify. Hand a clean-on-leakage dataset to QI risk scoring next. - To
evaluating-with-leakage-gates: wire this scan into the eval harness so a leakage regression fails CI, not just an F1 drop.
Edge cases & gotchas
- Never log the leaked value. Report offsets, labels, hashes — not the text. A leakage report full of plaintext SSNs is itself a breach.
- Checksum-gate card numbers. Apply Luhn before flagging 13–19 digit runs, or every order number and account id becomes a false "card leak."
- Surrogates are not leaks. If de-id used
method="replace", the output contains fake names/emails by design. The model second-pass may flag them — diff against the known mapping/surrogate set so you don't block on synthetic data. True leaks are values present in the original text. - Locale-aware dates and IDs.
dd/mm/yyyy,yyyy.mm.dd, NHS/SIN/fiscal-code formats vary; tune detectors to the data's locale or you under-detect. - Entropy is advisory. High-entropy ≠ identifier (could be a hash already). Route to human review, don't hard-block on entropy alone.
- Local-first. Run the whole scan on-device; do not ship the text to a cloud scanner to check whether it leaked.
Standards & references
- HIPAA Safe Harbor — the 18 identifier categories that must be absent: https://www.hhs.gov/hipaa/for-professionals/privacy/special-topics/de-identification/
- Luhn algorithm (ISO/IEC 7812-1) for payment-card checksum validation: https://www.iso.org/standard/70484.html
- NIST SP 800-188, De-Identification of Personal Information: https://csrc.nist.gov/pubs/sp/800/188/final
Version History
- f213557 Current 2026-07-23 00:43


