fcr-experimental-design

GitHub

用于设计或辩护作物研究手稿中的田间试验或模型设计。涵盖多环境试验、随机化、区组、G×E分析及作物模型校准,强调至少两季或多地点的严谨性,不编写代码。

Field-Crops-Research-Skills/skills/fcr-experimental-design/SKILL.md brycewang-stanford/Awesome-Journal-Skills

Trigger Scenarios

规划多环境试验(MET)或季节×站点×处理布局 审稿人质疑随机化、重复、区组或基因型×环境推断 决定如何表征环境(土壤、天气、物候) 设计作物建模研究(校准/验证、场景设计)

Install

npx skills add brycewang-stanford/Awesome-Journal-Skills --skill fcr-experimental-design -g -y
More Options

Non-standard path

npx skills add https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Field-Crops-Research-Skills/skills/fcr-experimental-design -g -y

Use without installing

npx skills use brycewang-stanford/Awesome-Journal-Skills@fcr-experimental-design

指定 Agent (Claude Code)

npx skills add brycewang-stanford/Awesome-Journal-Skills --skill fcr-experimental-design -a claude-code -g -y

安装 repo 全部 skill

npx skills add brycewang-stanford/Awesome-Journal-Skills --all -g -y

预览 repo 内 skill

npx skills add brycewang-stanford/Awesome-Journal-Skills --list

SKILL.md

Frontmatter
{
    "name": "fcr-experimental-design",
    "description": "Use when designing or defending the field-experiment or modelling design of a Field Crops Research (FCR) manuscript — multi-environment trials, randomization and replication, blocking and split-plot layouts, genotype-by-environment (G×E) structure, and crop-model calibration\/validation. FCR expects field experiments to span at least two seasons and\/or multiple environments. Strengthens the design; it does not write code."
}

Experimental Design (fcr-experimental-design)

FCR is demanding about field-experimental rigour. The design must credibly connect the agronomic question to evidence that generalises across environments. The single most important FCR-specific rule: field experiments should, unless exceptional circumstances apply, span at least two seasons and/or multiple locations/environments. Design for that from the start.

When to trigger

  • Planning a multi-environment trial (MET) or a season×site×treatment layout
  • A reviewer questioned randomization, replication, blocking, or G×E inference
  • Deciding how to characterise environments (soil, weather, phenology)
  • Designing a crop-modelling study (calibration/validation, scenario design)

Field-experiment design essentials

  • Multi-environment by design. Plan ≥ 2 seasons and/or multiple sites; define what an "environment" is (site×year, managed water/N regime). State why the set spans the target population of environments.
  • Randomization & replication. Use a proper randomized design (RCBD, resolvable incomplete-block / alpha-lattice, split-plot for factor hierarchies, strip-plot, augmented for many genotypes). State replication per environment and the randomization procedure — not "plots were arranged."
  • Blocking & spatial control. Block against known field gradients; plan for spatial analysis (e.g., row/column or P-spline) where fields are large or heterogeneous.
  • Plot management detail. Plot size, borders/guard rows, sowing density, dates, and the management applied — enough to reproduce the experiment.
  • Environment characterisation. Record soil and weather and present weather in relation to crop phenology; this is what lets readers interpret G×E.

Genotype/treatment × environment (G×E)

  • Decide up front how G×E will be modelled: factorial structure, which effects are fixed vs. random, and how environments enter (random sample vs. fixed targets).
  • Plan stability/adaptation analyses (Finlay–Wilkinson regression, AMMI, GGE biplot) where ranking across environments is the question.

Crop-modelling design

  • State the model and version, the cultivar coefficients, and the calibration vs. validation split (independent data, not the same trials).
  • Justify the scenario/factor design and the environments simulated; report what the model adds beyond the field data (extrapolation, yield-gap decomposition, generalisation).

The generalisation test (FCR-specific)

For your design, write one sentence: "These environments represent ___, so the result is expected to hold for ___ (and not for ___)." If you cannot, the design does not yet support a general, FCR-worthy claim — add environments or scope the claim.

Design-choice decision table (match layout to the question)

FCR referees expect the layout to follow from the agronomic question and the field's structure, with a named design and stated randomization. Pick — and justify — before committing plots.

Situation Design FCR expects Note
One factor, field gradient RCBD, blocks across the gradient name blocks, give replication
Many genotypes, few reps Resolvable incomplete block / alpha-lattice recover inter-block information
Factor hierarchy (irrigation × N) Split-plot (water = whole-plot) report whole-plot + sub-plot error
Large/heterogeneous field RCBD/lattice + spatial model (row–column, P-spline) pre-plan the spatial term
Genotype ranking across environments MET, environments a random sample enables AMMI/GGE, stability inference

Sizing anchors (illustrative, hedged)

No universal minimum exists, but FCR's ≥2-seasons/-environments expectation points to norms worth calibrating against — as illustrative anchors (confirm against your own variance): MET genotype trials often run ≥6–8 site-years before stability inference is credible; replication is commonly 3–4 blocks per environment; a response curve wants ≥4–5 levels.

Worked design vignette (illustrative)

Illustrative; the logic is the lesson. A team wants to claim a new wheat cultivar yields more under reduced N. A weak design — 1 site, 1 season, cultivar unreplicated — cannot separate cultivar from field position and yields no G×E information. The FCR-grade redesign: 2 seasons × 4 sites (8 environments) on a soil-N gradient, split-plot (N as whole-plot, cultivar as sub-plot), 4 blocks per environment, 5 N levels for a response curve, and a row–column spatial term — making the cultivar × N × environment surface identifiable and testable across environments.

Anti-patterns

  • One site, one season presented as sufficient (fails the multi-environment expectation)
  • "Randomized" asserted with no design named, no replication count, no layout
  • Treating a controlled-environment study as the main evidence (out of scope — see fcr-topic-selection)
  • Ignoring spatial heterogeneity in large fields; pseudoreplication (sub-samples treated as reps)
  • Calibrating and validating a model on the same data

Output format

【Design】RCBD / alpha-lattice / split-plot / MET / modelling
【Environments】#seasons × #sites; what they represent
【Randomization & replication】procedure + reps per environment
【G×E plan】fixed/random structure; stability analysis if relevant
【Environment characterisation】soil + weather vs. phenology recorded? [Y/N]
【Generalisation sentence】represents ___ → holds for ___
【Next】fcr-data-analysis

Supplementary resources

Version History

  • 1839142 Current 2026-07-05 13:14

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